More implication that Asuka's talking about Shinji specifically, not herself, at the end of the film.

"On March 28th, NHK aired the talk show, Anime Yawa, in their satellite channel. The subject was Neon Genesis Evangelion. ..."

From: http://animaniajapan.livedoor.biz/archives/17687653.html

Concerning the final line we adopted, I'm not sure whether I should say about it in fact. At last Anno asked me " Miyamura, just imagine you are sleeping in your bed and a stranger sneaks into your room. He can rape you anytime as you are asleep but he doesn't. Instead, he masturbates looking at you, when you wake up and know what he did to you. What do you think you would say?" I had been thinking he was a strange man, but at that moment I felt disgusting. So I told him that I thought "Disgusting". And then he sighed and said "... thought as much." He said. " I thought as much. "



This also, I feel, goes to show that The End of Evangelion isn't supposed to be happy or pleasant, despit what a lot of fans want it to be.